File format identified as PDB
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
registry.getSupportedServices: [MSAprobsWS, DisemblWS, TcoffeeWS, RNAalifoldWS, MafftWS, IUPredWS, GlobPlotWS, ProbconsWS, AAConWS, JronnWS, ClustalWS, MuscleWS, ClustalOWS, GLprobsWS]
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 119.9/245.4
processors available: 8
useCommandThread: false
Attempting to connect with MafftWS...
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@4dbf777a
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 213 ms
Attempting to connect with MuscleWS...
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 47.7/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 35 ms
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@76fa705d
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 52.9/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
ELECTRON TRANSPORT 06-FEB-13 3W5V
CROSS-LINKED COMPLEX BETWEEN FERREDOXIN AND FERREDOXIN-NADP+ R
found biomolecule 1: A, D
biomolecule 1: number of transforms: 1
found biomolecule 2: C, B
biomolecule 2: number of transforms: 1
FAD = FLAVIN-ADENINE DINUCLEOTIDE
FES = FE2/S2 (INORGANIC) CLUSTER
Attempting to connect with ClustalWS...
Setting space group name to P 1 21 1
3W5V
reading 6290 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
6290 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 52 ms